Detailed information of SNP:
|
SNP ID:
sf0228606470(Gbrowse)
Chromosome: chr02 Position: 28606470 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 70.78% | 29.22% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 489 | 44.38% | 55.62% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 330 | 47.88% | 52.12% |
| Tropical Japonica | 92 | 21.74% | 78.26% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228606470 | G->A | LOC_Os02g46900(LOC_Os02g46900.1) | Synonymous |