Detailed information of SNP:



SNP ID: sf0228606488(Gbrowse)

Chromosome: chr02

Position: 28606488
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 97.95% 2.05%
All Indica798 99.75% 0.25%
All Japonica496 94.96% 5.04%
Aus67 100.00% 0.00%
Indica I374 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica334 100.00% 0.00%
Tropical Japonica94 78.72% 21.28%
Japonica Intermediate68 92.65% 7.35%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 95.12% 4.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0228606488 C->T LOC_Os02g46900(LOC_Os02g46900.1) Synonymous