Detailed information of SNP:
|
SNP ID:
sf0228615080(Gbrowse)
Chromosome: chr02 Position: 28615080 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 60.06% | 39.94% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 493 | 8.32% | 91.68% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 7.49% | 92.51% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228615080 | T->C | INTERGENIC | None |