Detailed information of SNP:
|
SNP ID:
sf0228629089(Gbrowse)
Chromosome: chr02 Position: 28629089 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 63.77% | 36.23% |
| All Indica | 797 | 97.11% | 2.89% |
| All Japonica | 497 | 18.51% | 81.49% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 20.30% | 79.70% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228629089 | A->C | INTERGENIC | None |