Detailed information of SNP:
|
SNP ID:
sf0228687747(Gbrowse)
Chromosome: chr02 Position: 28687747 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 80.90% | 19.10% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 497 | 62.58% | 37.42% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228687747 | G->C | LOC_Os02g46990(LOC_Os02g46990.1) | Synonymous |