Detailed information of SNP:
|
SNP ID:
sf0228720110(Gbrowse)
Chromosome: chr02 Position: 28720110 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 58.72% | 41.28% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228720110 | A->C | INTERGENIC | None |