Detailed information of SNP:
|
SNP ID:
sf0228729558(Gbrowse)
Chromosome: chr02 Position: 28729558 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.38% | 43.62% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228729558 | T->C | INTERGENIC | None |