Detailed information of SNP:
|
SNP ID:
sf0228797694(Gbrowse)
Chromosome: chr02 Position: 28797694 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 56.86% | 43.14% |
| All Indica | 796 | 88.44% | 11.56% |
| All Japonica | 496 | 7.06% | 92.94% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228797694 | T->C | LOC_Os02g47180(LOC_Os02g47180.1) | Non-Synonymous SNP |
| sf0228797694 | T->C | LOC_Os02g47180(LOC_Os02g47180.2) | Non-Synonymous SNP |