Detailed information of SNP:
|
SNP ID:
sf0228830235(Gbrowse)
Chromosome: chr02 Position: 28830235 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 66.96% | 33.04% |
| All Indica | 748 | 41.18% | 58.82% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 335 | 31.34% | 68.66% |
| Indica II | 209 | 54.55% | 45.45% |
| Indica Intermediate | 204 | 43.63% | 56.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228830235 | C->T | LOC_Os02g47250(LOC_Os02g47250.1) | Synonymous |