Detailed information of SNP:
|
SNP ID:
sf0228905070(Gbrowse)
Chromosome: chr02 Position: 28905070 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.87% | 45.13% |
| All Indica | 799 | 89.49% | 10.51% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228905070 | T->C | INTERGENIC | None |