Detailed information of SNP:
|
SNP ID:
sf0228928298(Gbrowse)
Chromosome: chr02 Position: 28928298 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 77.57% | 22.43% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 53.52% | 46.48% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 36.42% | 63.58% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0228928298 | A->G | INTERGENIC | None |