Detailed information of SNP:
|
SNP ID:
sf0229017545(Gbrowse)
Chromosome: chr02 Position: 29017545 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.14% | 46.86% |
| All Indica | 797 | 89.08% | 10.92% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229017545 | G->A | LOC_Os02g47500(LOC_Os02g47500.1) | Synonymous |