Detailed information of SNP:
|
SNP ID:
sf0229030789(Gbrowse)
Chromosome: chr02 Position: 29030789 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 54.04% | 45.96% |
| All Indica | 792 | 91.29% | 8.71% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 371 | 94.07% | 5.93% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 208 | 87.02% | 12.98% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229030789 | G->A | INTERGENIC | None |