Detailed information of SNP:
|
SNP ID:
sf0229147829(Gbrowse)
Chromosome: chr02 Position: 29147829 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 72.58% | 27.42% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 493 | 42.60% | 57.40% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 58.68% | 41.32% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229147829 | T->A | INTERGENIC | None |