Detailed information of SNP:
|
SNP ID:
sf0229166424(Gbrowse)
Chromosome: chr02 Position: 29166424 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 89.07% | 10.93% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 479 | 82.88% | 17.12% |
| Aus | 61 | 21.31% | 78.69% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 326 | 93.25% | 6.75% |
| Tropical Japonica | 91 | 60.44% | 39.56% |
| Japonica Intermediate | 62 | 61.29% | 38.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229166424 | G->A | LOC_Os02g47720(LOC_Os02g47720.1) | Non-Synonymous SNP |