Detailed information of SNP:
|
SNP ID:
sf0229174456(Gbrowse)
Chromosome: chr02 Position: 29174456 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 64.14% | 35.86% |
| All Indica | 716 | 63.69% | 36.31% |
| All Japonica | 497 | 58.35% | 41.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 327 | 51.68% | 48.32% |
| Indica II | 203 | 81.77% | 18.23% |
| Indica Intermediate | 186 | 65.05% | 34.95% |
| Temperate Japonica | 335 | 41.79% | 58.21% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229174456 | A->G | LOC_Os02g47730(LOC_Os02g47730.1) | Non-Synonymous SNP |