Detailed information of SNP:
|
SNP ID:
sf0229215771(Gbrowse)
Chromosome: chr02 Position: 29215771 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 66.57% | 33.43% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 486 | 12.96% | 87.04% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 329 | 6.08% | 93.92% |
| Tropical Japonica | 90 | 22.22% | 77.78% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229215771 | G->C | INTERGENIC | None |