Detailed information of SNP:
|
SNP ID:
sf0229262750(Gbrowse)
Chromosome: chr02 Position: 29262750 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.60% | 28.40% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 46.48% | 53.52% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 64.48% | 35.52% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229262750 | C->T | INTERGENIC | None |