Detailed information of SNP:
|
SNP ID:
sf0229369653(Gbrowse)
Chromosome: chr02 Position: 29369653 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.47% | 39.53% |
| All Indica | 799 | 31.29% | 68.71% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 21.07% | 78.93% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229369653 | T->A | LOC_Os02g48000(LOC_Os02g48000.1) | INTRON |
| sf0229369653 | T->A | LOC_Os02g48000(LOC_Os02g48000.2) | INTRON |
| sf0229369653 | T->A | LOC_Os02g48000(LOC_Os02g48000.3) | INTRON |