Detailed information of SNP:



SNP ID: sf0229398817(Gbrowse)

Chromosome: chr02

Position: 29398817
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1418 62.62% 37.38%
All Indica798 35.34% 64.66%
All Japonica497 100.00% 0.00%
Aus67 98.51% 1.49%
Indica I374 15.51% 84.49%
Indica II213 59.62% 40.38%
Indica Intermediate211 45.97% 54.03%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0229398817 A->T INTERGENIC None