Detailed information of SNP:
|
SNP ID:
sf0229427619(Gbrowse)
Chromosome: chr02 Position: 29427619 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 80.95% | 19.05% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 496 | 65.73% | 34.27% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 93 | 26.88% | 73.12% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229427619 | C->T | INTERGENIC | None |