Detailed information of SNP:
|
SNP ID:
sf0229464815(Gbrowse)
Chromosome: chr02 Position: 29464815 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 81.01% | 18.99% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 489 | 58.49% | 41.51% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 328 | 67.38% | 32.62% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229464815 | C->T | INTERGENIC | None |