Detailed information of SNP:
|
SNP ID:
sf0229568880(Gbrowse)
Chromosome: chr02 Position: 29568880 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.51% | 42.49% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229568880 | C->T | INTERGENIC | None |