Detailed information of SNP:
|
SNP ID:
sf0229586828(Gbrowse)
Chromosome: chr02 Position: 29586828 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.01% | 22.99% |
| All Indica | 798 | 68.92% | 31.08% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 213 | 48.36% | 51.64% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229586828 | C->T | INTERGENIC | None |