Detailed information of SNP:
|
SNP ID:
sf0229701164(Gbrowse)
Chromosome: chr02 Position: 29701164 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 58.62% | 41.38% |
| All Indica | 799 | 93.37% | 6.63% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229701164 | G->A | INTERGENIC | None |