Detailed information of SNP:
|
SNP ID:
sf0229730134(Gbrowse)
Chromosome: chr02 Position: 29730134 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 71.03% | 28.97% |
| All Indica | 797 | 98.37% | 1.63% |
| All Japonica | 487 | 21.97% | 78.03% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 330 | 23.64% | 76.36% |
| Tropical Japonica | 92 | 22.83% | 77.17% |
| Japonica Intermediate | 65 | 12.31% | 87.69% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229730134 | A->G | INTERGENIC | None |