Detailed information of SNP:
|
SNP ID:
sf0229791897(Gbrowse)
Chromosome: chr02 Position: 29791897 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 81.30% | 18.70% |
| All Indica | 797 | 76.79% | 23.21% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 73.87% | 26.13% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229791897 | A->G | INTERGENIC | None |