Detailed information of SNP:
|
SNP ID:
sf0229809309(Gbrowse)
Chromosome: chr02 Position: 29809309 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1356 | 97.12% | 2.88% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 435 | 91.26% | 8.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 294 | 87.76% | 12.24% |
| Tropical Japonica | 77 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229809309 | T->G | INTERGENIC | None |