Detailed information of SNP:
|
SNP ID:
sf0229839591(Gbrowse)
Chromosome: chr02 Position: 29839591 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1298 | 69.49% | 30.51% |
| All Indica | 797 | 98.12% | 1.88% |
| All Japonica | 384 | 7.81% | 92.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 257 | 9.73% | 90.27% |
| Tropical Japonica | 78 | 3.85% | 96.15% |
| Japonica Intermediate | 49 | 4.08% | 95.92% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229839591 | G->A | INTERGENIC | None |