Detailed information of SNP:
|
SNP ID:
sf0229912293(Gbrowse)
Chromosome: chr02 Position: 29912293 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 60.79% | 39.21% |
| All Indica | 752 | 29.79% | 70.21% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 14.33% | 85.67% |
| Indica II | 196 | 38.27% | 61.73% |
| Indica Intermediate | 200 | 49.00% | 51.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229912293 | C->T | INTERGENIC | None |