Detailed information of SNP:
|
SNP ID:
sf0229912477(Gbrowse)
Chromosome: chr02 Position: 29912477 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 59.86% | 40.14% |
| All Indica | 782 | 95.14% | 4.86% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 94.86% | 5.14% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229912477 | A->G | INTERGENIC | None |