Detailed information of SNP:
|
SNP ID:
sf0229960758(Gbrowse)
Chromosome: chr02 Position: 29960758 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 59.05% | 40.95% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229960758 | A->G | LOC_Os02g49000(LOC_Os02g49000.1) | Synonymous |