Detailed information of SNP:
|
SNP ID:
sf0229999571(Gbrowse)
Chromosome: chr02 Position: 29999571 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1337 | 68.14% | 31.86% |
| All Indica | 717 | 41.84% | 58.16% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 328 | 21.65% | 78.35% |
| Indica II | 193 | 56.99% | 43.01% |
| Indica Intermediate | 196 | 60.71% | 39.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0229999571 | G->T | INTERGENIC | None |