Detailed information of SNP:
|
SNP ID:
sf0230008801(Gbrowse)
Chromosome: chr02 Position: 30008801 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 68.88% | 31.12% |
| All Indica | 797 | 97.99% | 2.01% |
| All Japonica | 484 | 15.50% | 84.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 326 | 20.25% | 79.75% |
| Tropical Japonica | 91 | 2.20% | 97.80% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230008801 | T->G | LOC_Os02g49080(LOC_Os02g49080.1) | INTRON |