Detailed information of SNP:
|
SNP ID:
sf0230020593(Gbrowse)
Chromosome: chr02 Position: 30020593 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 65.23% | 34.77% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 475 | 5.26% | 94.74% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 315 | 5.71% | 94.29% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230020593 | G->A | LOC_Os02g49100(LOC_Os02g49100.1) | INTRON |