Detailed information of SNP:
|
SNP ID:
sf0230028088(Gbrowse)
Chromosome: chr02 Position: 30028088 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1279 | 94.92% | 5.08% |
| All Indica | 660 | 90.45% | 9.55% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 308 | 87.99% | 12.01% |
| Indica II | 188 | 95.21% | 4.79% |
| Indica Intermediate | 164 | 89.63% | 10.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230028088 | C->T | INTERGENIC | None |