Detailed information of SNP:
|
SNP ID:
sf0230030661(Gbrowse)
Chromosome: chr02 Position: 30030661 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 81.88% | 18.12% |
| All Indica | 782 | 71.10% | 28.90% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 370 | 77.03% | 22.97% |
| Indica II | 206 | 62.62% | 37.38% |
| Indica Intermediate | 206 | 68.93% | 31.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230030661 | G->A | LOC_Os02g49120(LOC_Os02g49120.1) | Synonymous |