Detailed information of SNP:
|
SNP ID:
sf0230044352(Gbrowse)
Chromosome: chr02 Position: 30044352 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 73.97% | 26.03% |
| All Indica | 796 | 98.87% | 1.13% |
| All Japonica | 491 | 28.51% | 71.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 334 | 36.53% | 63.47% |
| Tropical Japonica | 91 | 3.30% | 96.70% |
| Japonica Intermediate | 66 | 22.73% | 77.27% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230044352 | G->T | INTERGENIC | None |