Detailed information of SNP:
|
SNP ID:
sf0230060589(Gbrowse)
Chromosome: chr02 Position: 30060589 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 93.09% | 6.91% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 442 | 80.77% | 19.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 302 | 90.73% | 9.27% |
| Tropical Japonica | 81 | 62.96% | 37.04% |
| Japonica Intermediate | 59 | 54.24% | 45.76% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230060589 | C->T | LOC_Os02g49170(LOC_Os02g49170.1) | Synonymous |