Detailed information of SNP:
|
SNP ID:
sf0230076756(Gbrowse)
Chromosome: chr02 Position: 30076756 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1296 | 87.89% | 12.11% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 381 | 62.20% | 37.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 245 | 82.86% | 17.14% |
| Tropical Japonica | 80 | 13.75% | 86.25% |
| Japonica Intermediate | 56 | 41.07% | 58.93% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230076756 | G->T | LOC_Os02g49210(LOC_Os02g49210.1) | INTRON |