Detailed information of SNP:
|
SNP ID:
sf0230098287(Gbrowse)
Chromosome: chr02 Position: 30098287 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1336 | 99.25% | 0.75% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 420 | 97.62% | 2.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 288 | 96.88% | 3.12% |
| Tropical Japonica | 78 | 100.00% | 0.00% |
| Japonica Intermediate | 54 | 98.15% | 1.85% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230098287 | G->A | LOC_Os02g49250(LOC_Os02g49250.1) | Non-Synonymous SNP |