Detailed information of SNP:
|
SNP ID:
sf0230101283(Gbrowse)
Chromosome: chr02 Position: 30101283 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 93.69% | 6.31% |
| All Indica | 792 | 89.14% | 10.86% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 370 | 94.05% | 5.95% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 73.21% | 26.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230101283 | A->T | LOC_Os02g49260(LOC_Os02g49260.1) | INTRON |