Detailed information of SNP:
|
SNP ID:
sf0230164259(Gbrowse)
Chromosome: chr02 Position: 30164259 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 96.31% | 3.69% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 60 | 30.00% | 70.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230164259 | C->T | LOC_Os02g49380(LOC_Os02g49380.1) | INTRON |