Detailed information of SNP:



SNP ID: sf0230174439(Gbrowse)

Chromosome: chr02

Position: 30174439
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 95.90% 4.10%
All Indica799 99.50% 0.50%
All Japonica497 99.80% 0.20%
Aus64 28.12% 71.88%
Indica I375 100.00% 0.00%
Indica II213 98.59% 1.41%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0230174439 C->T LOC_Os02g49390(LOC_Os02g49390.1) Synonymous