Detailed information of SNP:
|
SNP ID:
sf0230178061(Gbrowse)
Chromosome: chr02 Position: 30178061 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.37% | 39.63% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230178061 | A->G | LOC_Os02g49400(LOC_Os02g49400.1) | SNPs that disrupt initiation codons |