Detailed information of SNP:
|
SNP ID:
sf0230179188(Gbrowse)
Chromosome: chr02 Position: 30179188 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1354 | 57.31% | 42.69% |
| All Indica | 738 | 28.86% | 71.14% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 51.56% | 48.44% |
| Indica I | 348 | 24.71% | 75.29% |
| Indica II | 195 | 29.74% | 70.26% |
| Indica Intermediate | 195 | 35.38% | 64.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230179188 | A->G | LOC_Os02g49400(LOC_Os02g49400.1) | Non-Synonymous SNP |