Detailed information of SNP:
|
SNP ID:
sf0230214512(Gbrowse)
Chromosome: chr02 Position: 30214512 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 94.05% | 5.95% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 84.93% | 15.07% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 91.92% | 8.08% |
| Tropical Japonica | 91 | 80.22% | 19.78% |
| Japonica Intermediate | 66 | 56.06% | 43.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230214512 | C->T | INTERGENIC | None |