Detailed information of SNP:
|
SNP ID:
sf0230272019(Gbrowse)
Chromosome: chr02 Position: 30272019 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.18% | 41.82% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230272019 | C->G | LOC_Os02g49530(LOC_Os02g49530.1) | INTRON |
| sf0230272019 | C->G | LOC_Os02g49530(LOC_Os02g49530.2) | INTRON |