Detailed information of SNP:
|
SNP ID:
sf0230282954(Gbrowse)
Chromosome: chr02 Position: 30282954 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 61.57% | 38.43% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 495 | 0.61% | 99.39% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230282954 | C->T | INTERGENIC | None |