Detailed information of SNP:
|
SNP ID:
sf0230315970(Gbrowse)
Chromosome: chr02 Position: 30315970 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.62% | 42.38% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 497 | 18.11% | 81.89% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 24.78% | 75.22% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0230315970 | C->T | INTERGENIC | None |